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Please see this repository:
https://github.com/TransBioInfoLab/Bioc2019pathwayPCA
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Error in runHarmony.default(obj = x.sp, eigs.dims = 1:22, meta_data = x.sp@sample): eigs.dim is missing
Traceback:
1. runHarmony(obj = x.sp, eigs.dims = 1:22, meta_data = x.sp@sample)
2. runHarmo…
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Dear all,
What is the corresponding table in case of mouse genome in this command?
genes.df = read.table("gencode.v19.annotation.gene.bed");
Thanks
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Hi,
Thanks for making this package. I develop integrative methods to quantify cancer evolution (see https://townsend-lab-yale.github.io/cancereffectsizeR/index.html), and your armSCNA peak-finding a…
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I was thinking about adding [Integrative pathway enrichment analysis of multivariate omics data](https://doi.org/10.1038/s41467-019-13983-9) by Paczkowska et al from the recent PCAWG release.
> 202…
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Dear developers,
I was going through this vignette [Integrative analysis in Seurat v5](https://satijalab.org/seurat/articles/seurat5_integration) and would like to reproduce the figures, mainly to …
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Hi, I've been trying to run the second part (SEVtras.ESAI_calculator) of the tool, but I am getting the error below.
```
/home/kleinman/seol.song/projects/kleinman/seol.song/from_hydra/SEVtras/ven…
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Hi,
Suggestions for new additions:
#### 1. MHCFlurry for perhaps being a potential brick for MHC 1 class proteins binding affinity.
- Repository: https://github.com/openvax/mhcflurry
- Pap…
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https://pubmed.ncbi.nlm.nih.gov/26061751/
Study in Mercurial: http://data.cbioportal.mskcc.org/hg/cbio-portal-data/file/tip/studies/lgg/tcga/pub
Please keep this checklist for curation of a new st…