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Hi,
Really cool project!
I wondered if the requirement for monotonic increase of RT and predicted RT during graph construction precludes the application to other non-monotonic regressionn tasks li…
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Hello @RalfG,
First thanks very much for developing such wonderful tool, I really enjoyed working with it!
I have a question regarding how to apply MS2rescore to bruker (.d) or broadly speaking,…
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Very useful project guys! Sorry if the below can already be found and I missed them.
Currently the core variables are msLevel, rtime, scanIndex. Ion mobility can be accessed via
```{r,}
spectr…
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Best,
Currently the --vis option is a great tool for me for visualizing the RT and intensity for peptides of interest. Is it realistic to also extract ion mobility information next to these for tim…
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Good day.
Is there any intention or estimated time for implementation of access to Ion Mobility data from Bruker devices?
I use Pyteomics regularly and now I'm starting to face some TIMS TOF dat…
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When trying to read in the output of spectronaut_report file, the column called "FG.ApexIonMobility" is not being imported with the rest of the data (the column seems to be dropped). Trying out the fo…
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Hello,
While looking for options to load mzML files from C/C++ I stumbled upon MSToolKit :-)
There seems some ion mobility support in `mzParser`, but his seems unused at the moment in MSToolKit.…
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Hello,
I'm currently annotating the SDRF for [this project](https://www.nature.com/articles/s41597-020-00724-7) ([PXD020785](https://www.ebi.ac.uk/pride/archive/projects/PXD020785)). I'm wondering…
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For dense data it is hard to select precursors.
![image](https://user-images.githubusercontent.com/5803621/152846512-68c33429-22cc-427c-8dd7-fa494deb67e2.png)
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When I use OpenSwath to run 4D DIA data, I encountered the following problem.
My command line input is:
OpenSwathWorkflow -in ./20191201-100ngHela-HMonecolumn1.9um600_Slot1-54_1_4653.mzML -tr ./d…