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Hi,
The lengths of the features (or k-mers) I'm interested in are different. It didn't return any warning in the 'index' processing, but I got an error message when I ran the 'merge' module.
`[ERR…
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Dear KrakenUniq team,
I have a theoretical question - I was wondering if you could suggest something here. I am using KrakenUniq to classify bacterial reads from RNA-seq experiments. The database …
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### Description of feature
Add to the output the FASTK .ktab during k-mer subworkflow
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There are sketches with k-mer content but no snipe bases:
- ERX2252489
- ERX2170396
- ERX2170401
- ERX4088217
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Hi,
We have run annotate_hits_pyseer to annotate k-mers.,but we are not sure if it has mapping quality when annotating k-mers? Do you have any suggestions?
Thank you in advance!
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Hi there
We are having trouble using the newer versions of Kallisto, mainly all versions >=0.50.0 with the new index. Here is what I'm doing:
```bash
$ ./kallisto_0.50.1.sif kallisto index -i t…
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## Expected Behavior
mmseqs createindex "colabfold_envdb_202108_db"
## Current Behavior
Not enough memory to keep dbreader/write in memory!
Memory limit: 14845796352 dbreader/writer need: 2275…
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```shell
---------------------------------------------------------------------------
You are running Scasa v1.0.1 using docker ....
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Hello,
I would want to run ska2 with k gretter than 63, for example k-mer=81 with in the middle SNP.
Is it possible to ugrade the ska2 with upgraded k?
I try k-mer=81 with ska1 but failed.
If …
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Print how much is the data being reduced on each filtering step