-
Hello Ming, I was wondering if 'cell segmentation' would fit this collection of spatial omics.
For example:
- Baysor, https://github.com/kharchenkolab/Baysor
- InstanSeg, https://www.biorxiv.org…
-
### Description of feature
Repo
https://github.com/kharchenkolab/Baysor
Description of feature
https://www.10xgenomics.com/analysis-guides/using-baysor-to-perform-xenium-cell-segmentation
I…
heylf updated
1 month ago
-
Hi,
To run on the data, `https://github.com/kharchenkolab/BaysorAnalysis/tree/master/data`, do you have instructions on how to run baysor on these samples? I am unable to reproduce the figures from…
-
See https://github.com/kharchenkolab/cap-ontology-search/issues/99 for previous work.
-
Hi, TengGao@teng-gao,
I am very interested in your research, but I have encountered some problems. When I use Numbat$new (), the resulting R6 object gexp_roll_wide and hc are empty, and nb$plot_exp_r…
-
### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
heylf updated
5 months ago
-
@teng-gao
Hi,
You mentioned that clone1 is normal cells (https://kharchenkolab.github.io/numbat/articles/results.html).
Why did I get two tumor cells? Is it because the p_CNV for these two cells …
-
Hi, when I run the STARmap example, the following problem occurs
baysor preview -x 'x' -y 'y' -g 'gene' -c configs/starmap.toml -o output_dapi molecules.csv
[19:16:50] Info: (2023-09-13) Run Bayso…
-
i keep getting this error when i execute baysor run:
ERROR: LoadError: MethodError: no method matching tryparse(::Type{Symbol}, ::String)
Closest candidates are:
tryparse(::Type{Union{}}, ::…
-
Hi,
Thanks for the beautiful tool and hard work you have put into Monocle.
I have a question in regards to whether it would be possible to compute modules without feature loadings. Currently, I am…