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Hi，I want to install mafTools in python2.7 environment. I have installed sonlib successfully, but I met errors when I installed pinchesAndCacti like this:
`cd externalTools && make all
make[1]: E…
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Preserve similar functionality from maftools::gisticChromPlot -- label cytobands instead of (or with) genes.
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**Describe the issue**
Hello! I am using maftools version 2.21.1 and am not able to use the function OncogenicPathways. I saw some documentation online that this function may only exist under v2.6.05…
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I am finding it challenging to convert the RaggedExperiment to a more MAF-like
tabular form. Am I missing something? Maybe we should add a component with
MAF content, perhaps as a dense GRanges, n…
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Hi,
Thank you for developing this very useful package. I was trying to run the sampleSwaps command to check whether my bam files belong to the same cases. But while running the command, I encounter…
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**Describe the issue**
Hi I am planning to analyze copy number alterations in a small cohort (n=15), and I have the segmentation data in TCGA format. I tried to generate GISTIC files for maftools, ho…
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What is the loci for this module？
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**Describe the issue**
Hi,
I would like to show 2 variant classification as 2 triangles(split tile) for same gene if that gene happens to have 2 types of variant classifications in sample sample. …
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Hi,
The alignment is very fast in my case, which is based on one chromosome from different species. Thanks for the great work. I am going to build a phylogenetic tree with the alignments. So I used…