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Dear Peter:
Sorry to bug you on this. I am very puzzled that some of my GWAS do NOT have Manhattan plot displayed. Please see the screenshot below. Even after I clicked the "Manhatten" link, noth…
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Hello Nikolaos and Pavlos,
I understand there were issues about Mahattan plots already asked by other ppl. However, I am encoutering something new that others did not mention. I am hoping to get som…
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**Is your feature request related to a problem? Please describe.**
Need plotting method for summary statistics
**Describe the solution you'd like**
A clean, interactive manhattan plot implemented…
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I am trying to make manhattan plots of yeast genomes. To reduce noise I have attempted to create a strict mask for the Cerevisiae Saccharomyces genome. However, when I try to calculate histograms with…
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### Feature Proposal
Hi,
Have any of you ever implement Manhattan or QQ (Quantile-Quantile plot) in chart.js? I have to implement both charts and can't find any solution / npm / idea. Can you help m…
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Hi Kivanc,
I've updated kGWASflow and tried to run the analysis including aligning the kmers. Unfortunately, generating the Manhattan plot yields errors, with unhelpful logs:
```
y_max: 19.2846…
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**Aim**
To generate Manhattan plot with plotGrandLinear function
**Script**
library(GenomicRanges)
library(ggbio)
library(readr)
library(tidyr)
library(dplyr)
input_dir = "/mnt/d/NGS/r…
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Ask Daniele for an example
timeu updated
7 years ago
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Hi,
I want to draw a Manhattan plot in one chromosome, but I always get this strange style. Since cmplot cannot adjust "xlim", I want to ask how I can improve my image ?
Here is my data, code and …
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GWAS manhttan has X and Y chromosome infromation in chr