-
Hello,
What do you think about using PECAT for assembling metagenome mixing haploid and diploid genomes ?
Thanks
Germain
-
Hello,
I used Novoplasty on metagenomic data. I used this file as a configuration file:
============
Project:
-----------------------
Project name = MS_assembly_chloroplast
Type …
-
Hello dbcan devs!
Thanks for developing the dbCAN command line tools, and thanks for providing such helpful and detailed documentation and tutorials!
I'm using dbCAN to annotate CAZymes/CGCs/su…
-
Dear developer,
I found there are inconsistent opinions across experts. Are you suggesting Canu for assembling metagenomic data from complex environments such as wastewater? If so, what settings sh…
-
Thank you for developing such an excellent tool. Since NextPolish was not tested in metagenomic data which has strain-level polymorphism(similar to haplotypes), I wondered if there were any problems w…
-
### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above.
Sorry if I missed this in open issues - didn't see a thread.
…
-
Hi, I am trying to learn the error rates using DADA 2, i was able to do it for forward sequence, unfornutaly, fot reversed it always shows
"Error rates could not be estimated (this is usually beca…
-
Hello! I am interested in using Meta-Thermo and I am curious which is the recommend input for it. Can I use this tool for individual MAGs or would be more appropriate to use the total reads of a certa…
-
Hi, can I use Transposome for annotating transposable elements from paired-end metagenomics data of complex microbial communities? If so, what would be the repeat_database in the config file?
Thanks!
-
Hi, I am would like to get KOs from metagenomic data, I am using the script:
perl mebs.pl -input dir_metagenomic -type metagenomic -comp
I get a table with Pfam ids, entropy, and #matched_peptid…