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Update metagenomics SOP to handle multiple projects in a same prep plate. Add logic into iSeq counts merging modules to support multiple projects.
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Hi,
I want to share a new way to apply SpiecEasi and gather any input or critiques from the community.
I’m working with two datasets collected at the same time point:
1. A profile of 20 mucosa…
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Hi, any chance can we convert metamaps results to kraken style report file?
thanks
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(Meta)-transcriptomics data is stored in European Nucleotide Archive, ENA. However, there is no counts table but only sequences ([example](https://www.ebi.ac.uk/ena/browser/view/SAMEA13929756?show=ana…
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Dear,
First of all, thanks for developing all tools around the AMR++ pipeline!
I have a few questions surrounding the steps after RGI main. So RGI main seems to work well, no error there. When I r…
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Hi,
I was using Bracken to re-estimate reads at Class level for Eukaryotes. Now, there is a certain fish Order that I don't want included in the general fish Class, because it's the Order of my hos…
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Hello,
this is a very nice package! Thank you.
I sequenced 84 biological samples (cotton swabs) obtained from a low biomass environment and 4 negative controls (blank swabs, no DNA) by using a s…
ghost updated
3 years ago
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Should short reads from metagenomic data be mapped to those genes (or protein) (>90% identity for blastx or diamond blastx for example) that were found in the database to calculate relative abundance…
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Provide trainings with details about the algorithms of the main analysis to help user really understand what is happening .
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**Snakemake version**
Version 6.3.0
**Describe the bug**
When executing a Snakemake workflow using google life sciences executor, the first few jobs go through and then I get an SSL error. The …