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Hi, old friend
Currently I would like to import metaphlan result for downstream analysis.
But I failed in very first step. I tried to import result from metaphlan3.1 with
`abund_file_path
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Update OCMS_Zymbiomics so that it works with:
kraken2 pipeline outputs
metaphlan outputs
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
As in title, this report is forward from https://github.com/nf-core/taxprofiler/issu…
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Relocated from https://github.com/galaxyproject/usegalaxy-tools/issues/649
Many users have reported problems with some of the indexes (not all are a problem, just some). Suspect a path problem or c…
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Hi @bebatut ,
is it possible to add this metaphlan DB version ( mpa_vJan21_CHOCOPhlAnSGB_202103.tar ; see the full link below) to the wrapper? another question is I can't find the data_manager_metaph…
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I was wondering whether there are any plans for a major future update release (v4)?
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### Name of the tool
MetaPhlAn
### Tool homepage
https://github.com/biobakery/MetaPhlAn
### Tool description
"MetaPhlAn is a computational tool for profiling the composition of microbial communit…
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### Description of feature
I was running taxprofiler mapping reads to metaphlan and I was not obtaining a combined report table until I used --run_profile_standardisation (following @jfy133 advice). …
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Thanks for the good software.
I have completed the searching and profiling commands and got profiling results of multiple samples. How to merge these profiling results into one feature table for d…
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Hello everyone,
My team and I are analyzing short read metagenome data from human respiratory samples using KrakenUniq with the MicrobialDB database (available from https://benlangmead.github.io/aws…