-
Hi,
I am going to use DIA-NN 1.9 on linux for metaproteomics. It is mentionned that on Linux one .d, .mzmL and .dia data are supported. My data are in .wiff file.
If I am using the combination of…
-
Expanding the metaproteomics workflow
There are two limitations of the current metaproteomics workflow that limit its utility for the community,
(i) peptide sequence identification currently requires …
-
[Kaiko](https://github.com/microbiomedata/kaiko_metaproteome) will be integrated into the metaproteomics WDL pipeline.
TODO
- [x] Determine fixed and variable input elements that will need to be …
-
# Title
Exploring and solving functional analysis gaps in metaproteomics.
# Abstract
Metaproteomics, the study of the full protein complement of microbial communities, is becoming an increasi…
-
We added a nmdc schema Class for the gene aggregation for the sequencing workflows, see https://microbiomedata.github.io/nmdc-schema/FunctionalAnnotationAggMember/, but not for the metaproteomics. I b…
-
Expanding the metaproteomics workflow
There are two limitations of the current metaproteomics workflow that limit its utility for the community,
(i) peptide sequence identification currently requires …
-
We aim to engage with the broader metabolomics and metaproteomics research communities, and
relevant standards organizations by hosting NMDC community workshops to encourage discussions
around identif…
-
The need here is driven from metabolomics and metaproteomics where @corilo would like to be able to specify the input as one of:
sample
blank
QC
-
Hello,
I am repeatedly getting an error message when I load my output from MPA. I check all fields in MPA for the csv output but when I load it into this tool I get an error saying more columns tha…
-
like `metaproteomics_functional_annotation_agg`?