-
Hi Jeremy--
Many thanks for helping me out with the uploading of files to the Virtual Box. I've managed to figure that out.
I was doing a preliminary run for nonLTRs using MGEScan-nonLTR and rec…
-
We recompiled hmmer so will work on our version of centos but translate does not.
If I recompile I get segmentation error when try to run but seems same problem that not centos future proof.
./tra…
-
Hi,
I am a new one for the mgescan software. here, the following error has existed when installing. However, I have no idea how to deal with it.
FastaLikeFile.cpp: 在成员函数‘virtual bool FastaLikeFi…
-
$MGESCAN_SRC is not defined.
Is it related to python version?
-
The following "quick installation" command overwrote my .bash_profile. This is not an appropriate thing to do without asking.
curl -L https://raw.githubusercontent.com/MGEScan/mgescan/master/one-li…
-
Hello @lee212 ,
I've tried to test this tool on some sample input, but didn't achieve positive results (empty ltr.out and ltr.gff3 without any records):
Here is output:
```
(mgescan)[maybelinot@***…
-
In the full file in the result of mgescan, what do the suffixes en.dna and rt.dna stand for, and why are they used as candidate LINE sequences,some sequences have the same starting position. Why not e…
-
Hi there,
I have made a guide to annotate plant TEs and reports generation, using a modified version of EDTA (full lineage annotation) together with AnnoSINE and mgescan nonltr and TEsorter.
I ho…
-
See the test file: sandbox/mgescan/example1.txt
-
Hi Hyungro
I ran MGEScan nonLTR locally not within galaxy. My nonLTR nonltr.gff3 output has a few features whose end coordinate is beyond the end of the sequence it is on. Any idea why this might b…