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Hello Team,
I simulated a shotgun metagenomic Nanopore dataset using NanoSim, containing:
65% bacterial sequences from 32 bacterial species
35% human sequences
For profiling, I created a Sylph…
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[InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains](https://www.biorxiv.org/content/10.1101/2020.01.22.915579v1)
Coexisting mi…
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Hello, I've read your articles on the kefir microbial community, and I would like to inquire about how to define my own culture medium for simulating the genome metabolism of a single strain. I've rev…
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Hi all,
I have Minion data for two closely related microbial strains. I assembled the two strains into two assemblies of four and five contigs.
I then followed your notes regarding using LAST to…
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## Institute of Technology Bandung Culture Collection
**GRSciColl URL**: https://www.gbif.org/grscicoll/institution/dfad7257-8343-4a16-816a-9e48469cf392
**Code**: `ITBCC`
**Fuzzy name search in GBIF p…
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Dear Salmon Team,
Not sure if this message should go here or on the google group, sorry if it shouldn't go here.
I am trying to analyse meta-transcriptome RNAseq data to obtain genes expressio…
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We would like to increase the number of colors that are available for bio-printing. This version should add at least one more color to the existing 5 E.coli-based colors (in addition to the 2 wild-typ…
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Hallo,
I have some questions about the use of Phylophlan as phylogenetic analysis for microbial isolates/genomes :
- Is it correct to use Phylophlan for detecting persistent strains ?
- How d…
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Add walkthroughs/tutorials for basic use-cases to the documentation. The resulting images can also be added to the gallery.
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I just ran gather on some genomes (attaching a snippet of results below). These are all single genomes.
```
overlap p_query p_match avg_abund
--------- ------- ------- ---------
5.3 Mbp …