jonathancrabtree Circleator issues

jonathancrabtree / Circleator

Flexible circular visualization of genome-associated data with BioPerl and SVG.

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issues

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Build test failed and steps to build circular SNPs genome

#40 nsmt89 opened 1 year ago
0
MSG: Failed validation of sequence '1'. Invalid characters were:

#39 Karimi-81 opened 2 years ago
0
Can't locate object method "get_values" of "Circleator::SeqFunction::BAMCoverage"

#38 michaelgruenstaeudl closed 5 years ago
0
Plot flatfile using Ensemble GTF

#37 gk7279 closed 2 years ago
0
Add chord drawing functionality.

#36 jonathancrabtree opened 6 years ago
0
LinePacker doesn't handle origin-spanning features

#35 jonathancrabtree closed 6 years ago
1
feat-track reference to track with user feat definition creates duplicate feature

#34 jonathancrabtree closed 6 years ago
0
Some Rect elements contain "r" (radius) attribute

#33 jonathancrabtree closed 6 years ago
1
length_kb label function labels origin-spanning features with negative lengths

#32 jonathancrabtree closed 6 years ago
0
Can't use string ("") as a subroutine ref while "strict refs" in use

#31 annaallueg closed 6 years ago
22
Improved error checking: automatically list and/or find track options.

#30 jonathancrabtree opened 7 years ago
0
Automatically compute --pad, --pad_left, etc.

#29 jonathancrabtree opened 7 years ago
0
Add linear mode option

#28 jonathancrabtree opened 7 years ago
0
Labels not showing up

#27 dkoslicki closed 8 years ago
5
Regression tests using system perl instead of the one used to run Build.PL

#26 jonathancrabtree closed 8 years ago
0
Bug in loop handling code when multiple loops are present

#25 jonathancrabtree closed 8 years ago
1
Possible HTML/CSS problem with predefined tracks page

#24 jonathancrabtree closed 9 years ago
0
Curved rectangle outline/path fails to account for stroke-width

#23 jonathancrabtree opened 9 years ago
1
Automatically set packer=none when label-type != curved

#22 jonathancrabtree opened 9 years ago
0
Make t/circleator.t insensitive to architecture/platform.

#21 jonathancrabtree closed 8 years ago
0
Internal links broken

#20 jonathancrabtree closed 9 years ago
1
Filter BioPerl Unrecognized DBSOURCE data warning.

#19 jonathancrabtree opened 10 years ago
0
See if there's a way to get GitHub pages to treat .cfg files as plain text.

#18 jonathancrabtree opened 10 years ago
2
Reduce memory requirements of Circleator/Parser/SNP_Table.pm

#17 jonathancrabtree opened 10 years ago
0
favicon.ico not showing up on GitHub pages

#16 jonathancrabtree closed 10 years ago
0
Fix Markdown code blocks in documentation.

#15 jonathancrabtree opened 10 years ago
1
Rename feat-type option to "output-feat-type" or similar.

#14 jonathancrabtree opened 10 years ago
0
Check/fix z-index processing.

#13 jonathancrabtree opened 10 years ago
0
Build.PL only works for non-system-wide installs

#12 jonathancrabtree closed 10 years ago
0
Add walkthroughs/tutorials for basic use-cases.

#11 jonathancrabtree opened 10 years ago
3
Try to make an rc1 release before the repo is public.

#10 jonathancrabtree closed 10 years ago
1
Add samtools to requirements.

#9 jonathancrabtree closed 5 years ago
0
Add links to config files to Gallery images.

#8 jonathancrabtree closed 10 years ago
0
Update "Citation" section of README.md and gh-pages

#7 jonathancrabtree closed 9 years ago
0
Update README.md links/images after gh-pages-dev goes live.

#6 jonathancrabtree closed 10 years ago
0
Add WIG file parser.

#5 jonathancrabtree opened 10 years ago
0
Add BED file parser.

#4 jonathancrabtree opened 10 years ago
0
Check gallery images for release restrictions.

#3 jonathancrabtree closed 10 years ago
1
Make t/circleator.t save log files if tests fail.

#2 jonathancrabtree closed 10 years ago
0
Make t/circleator.t insensitive to minor Perl SVG module changes.

#1 jonathancrabtree closed 6 years ago
3