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Hi,
I am currently using MassLin2 to analyze my longitudinal microbiome dataset; however, I saw your recent paper describing LinDA and its strengths in comparison to MassLin2. Therefore, I would li…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mkbwang/ADAPT
Confirm the following by editing ea…
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Dear Greg - thanks for your continued work on this and for this follow up paper with updated pipeline. I'm the lead author of [Hermida et al. Nat Commun 2022](https://www.nature.com/articles/s41467-02…
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I tried to download and use the Version 19 16S rRNA Reference (PDS) instead of the older taxonomy files in the Galaxy 16S Microbial Analysis with mothur (extended) tutorial (https://training.galaxypro…
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Microbiome analysis reveals gut microbiota alteration of early-weaned Yimeng black goats with the effect of milk replacer and age
https://pubmed.ncbi.nlm.nih.gov/33789672/
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I would like to get your opinion on a topic. I am new to differential microbiome analysis and recently conducted a study where I examined the microbiome of animals in three different health states ove…
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Hi there,
I have two questions:
1. You have mentioned that "ONTbarcoder has been optimized for protein coding gene like COI. While **there are ways** to obtain consensus for length variable non …
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Hello 👋
So, I did a mini-analysis 🔬 of the BugSigDB data based on a full_dump.csv file gotten from [BugSigDBExports](https://github.com/waldronlab/BugSigDBExports?tab=readme-ov-file) 2 weeks ago and…
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I propose adding support for _(Tree)SummarizedExperiment_ data container that is an alternative to _phyloseq_ in the MGnifyR R package.
We can open a Pull Request?
An increasing number of micro…
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Hello,
I acknowledge that I have submitted several posts to this GitHub Discussions in the past few weeks, and I always appreciate your prompt and helpful replies! This package and your replies have …