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Is it possible to use PhyloCSF on mitochondrial genomes, i.e. with an alternative genetic code?
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I wonder if you are interested in developing sketches for mitochondrial or plastic genomes?
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Dear author,
Thanks and cheers for developing this package!
I have the question as to how to use the package to download complete mitochondrial genomes from the NCBI. This is because I am going …
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Hi,
I have assembled the mitogenomes of 8 Microctonus aethiopoides using Flye in meta mode on ONT data. The mitogenomes were extracted from the assembly using the GetOrganelle tool. According to the …
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1. Is REGENIE capable of analyzing mitochondrial genomes?
2. If yes, what are the parameters that I need to set to analyze mitochondrial genomes?
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Hi,
we recently sequenced a batch of 19 fungal isolates. I tried to assemble the genomes a few different ways (simplex + duplex or simplex corrected only) in order to figure out if there is still a…
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Hello,
I tried to find the mitochondrial sequences in my assembly.
I assembled CLR PacBio reads using CANU for a mollusc genome.
As reference I used 2 mitochondrial genomes of the same species an…
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At the moment all the useful information is in nexus format, which can be annoying to work with.
E.g. we have this:
```
begin SETS;
[partitions]
CHARSET COI_1stpos = 1-1592\3;
CHARSET C…
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Dear Changwei,
I was using autoMito to generate the 2 gfa files (raw and master) of the assembled Malus Domestica genome (as in Demo2) with the code as follows:
~/PMAT-1.5.3/bin/PMAT autoMito -i…
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### Project title: Comparative analysis of camel mitochondrial genomes ###
#### The aims of this project are to: ####
- annotate the mitochondrial genome of Arabian camel
- the mitochondr…