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**Submitting author:** @bjmt (Benjamin Jean-Marie Tremblay)
**Repository:** https://github.com/bjmt/universalmotif
**Branch with paper.md** (empty if default branch): paper
**Version:** v1.23.0
**Edit…
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Hello,I'm trying to create the chicken's cistarget database for my single-cell research analysis, and already creating the GRCg6a.regions_vs_motifs.rankings.feather throught EPD's bed and v10_clust mo…
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Thank you for the wonderful tool! When I want to make my own GRN, get error. My network can't download ref_genome so
I manual download https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.fa…
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Hi,
Firstly thanks so much for developing this wonderful tool!
I am trying to figure out how to get the step3: motif analysis running. I've already managed to get step1 and step2 running using t…
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In my analysis I am interested in obtaining (1) methylation motifs, (2) (non)methylated occurrences of those motifs at the read level. The output of nanomotif seems highly relevant for this, but is at…
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Hi I am having issue while running snpEff for annotating the vcf file.The process is getting killed while running. What might be causing the issue?
Please see the error mentioned below
```
java…
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Hi,
AptaSuite asks for using CapR for secondary structures prediction but this program calculates RNA folding. Do you have any suggestions how to involve DNA secondary structure prediction in AptaSu…
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Hi everyone,
I ran some samples using an updated Dorado model and I'm getting different thresholds from Modkit for the same sample. In my case, I have a lower calling threshold compared to, for examp…
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Hi, I wanted to ask some questions about the motif-based outlier analysis.
I have a cohort of 40 individuals (WGS), and I suspect that one of them may have am increased burden of repeat expansions …
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Hi @readmanchiu
For VCF output of STR's I believe symbolic alleles are commonly used, e.g.: for a variant of 20 repeat units.
Is there a reason Straglr is outputing the full sequence as ALT all…