-
Carried over from #958
- [398e34a9-8736-4b27-a9a7-31a47a67f446](https://cellxgene.cziscience.com/collections/398e34a9-8736-4b27-a9a7-31a47a67f446)
- `kit` should be used to update `EFO:0008913`…
-
This is essentially a reply to https://github.com/brainglobe/bg-atlasapi/issues/96, but I'm starting a new issue to track this idea. Sorry for the long post, but interested in your ideas, @brainglobe/…
-
Hello, I was trying the MERFISH mouse brain data, but the data obtained through the yao et al. paper https://www.nature.com/articles/s41586-023-06812-z#data-availability is not the same as what you s…
-
Hi, I want to know the estimated count and density of cell types in mouse visual area. But, I checked the website (https://bbp.epfl.ch/nexus/cell-atlas/) and found that the data for VISli (Laterointer…
-
### Task motivation
The growing availability of single-cell data has sparked an increased interest in the inference of cell-cell communication (CCC), with an ever-growing number of computational to…
-
**What's the problem this feature will solve?**
Scientists who are processing tissues often consult a 2D atlas, and record their dissected areas based on an atlas plate (image in the series). When th…
-
In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
-
Can you provide the ipynb file for placenta Trophoblast differentiation, Mouse cell atlas, Oligodendrocyte differentiation, and Planaria parenchyme differentiation and multifurcating in the simulated …
-
I excluded the pretraining module in the code for running this kind of dataset. Please suggest what modification I need to perform in the existing code.
-
Dear authors,
I am trying to run the celloracle tutorial in SDSC linux jupyter enviroment. Everything is fine except that I get the following message when import celloracle (import celloracle as co…