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To whom it may concern,
Thank you for the templates to use on HPC :D
I'm triggering an R target pipeline on snakemake together with R docker image on singularity. The pipeline:
`#!/usr/bin/env …
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Different but interesting alternative synthetic controls:
> Wilson *et al.* (2016) Recognizing false positives: synthetic oligonucleotide controls for environmental DNA surveillance.
> https://doi…
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Meta-issue for things we should probably cite in our write-up
> Sepulveda *et al.* (2020) The Elephant in the Lab (and Field): Contamination in Aquatic Environmental DNA Studies
> https://doi.org/…
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Characterization of Supragingival Plaque and Oral Swab Microbiomes in Children With Severe Early Childhood Caries - Vivianne Cruz - frontiers
https://www.frontiersin.org/journals/microbiology/article…
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Hello @benjjneb,
Thanks for dada2 we are following your ITS pipeline, but are having issues with some unexpected read loss. We find ourselves losing a large majority of our fungal reads and we are …
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Inferences in microbial structural signatures of acne microbiome and mycobiome –Jubin Kim et al – Journal of Microbiology
Note: The open access version of this paper is unavailable. The pdf version…
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soil_taxonomic/local classification method
soil_taxonomic/local classification
soil_type
soil type method
soil_taxonomic/FAO classification
~link to classification information~
-- Removed?
These…
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Initial Request
Add the term "fungi: Coccidioides" to the Examined_Detected code table to aid in the migration of legacy data.
_Proposed Value:
fungi: Coccidioides
_Proposed Definition:
Cocci…
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Initial Request
Add the term "microbiome" to the Examined_Detected code table to aid in the migration of legacy data.
_Proposed Value:
microbiome
_Proposed Definition:
The microbiome is a co…
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One reviewer raised the following point:
The one concern I had was with quality control. I noted that undergraduate students were the ones inputting the data, which is an excellent volunteer idea.…