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Hi There!
I was performing a dbRDA but notice that the percentage explained by the axis are different doing manually and with the microeco
I will send here the codes and the files
##### Ordin…
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# 降维/排序分析（ordination analysis）
Ordination analysis（排序分析）是生态学和统计学领域中用于分析和解释多变量数据的方法之一。这个方法通常被用于探索和可视化生态学或生物学数据中的pattern，尤其是在物种组成和环境因素之间的关系方面。
[https://asa-blog.netlify.app/p/ordination-analysis/](htt…
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[The ordination method section](https://microbiome.github.io/OMA/docs/devel/pages/20_beta_diversity.html#sec-unsupervised-ordination) does only describe available methods, but does not really say the …
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Hello,
I am using R version 4.1.1 and microbiotaPair version 0.0.2
I am trying to run the example
`data(physeq_data)`
`physeq
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Dear Joey,
I am trying to make some ordination plots on my data, but I always encounter errors when I use `type = "samples"` using plot_ordination.
`> mydata`
`phyloseq-class experiment-level object…
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I am working through the Wallace v2.0 vignette, and I run into an error in Module: "Environmental Ordination":
Warning: Error in [.data.frame: undefined columns selected
2: shiny::runApp
1: run…
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use some ordination method (PCA/RDA/NMDS) to visualize the community changing through time -- is it moving in a direction or randomly jumping around?
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Hi,
I am trying to get the CAP1, CAP2 and bacterial loading values from a capscale.phyloseq ordination object and look at bacterial contributions to beta-diversity.
```
ord
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Hi @poer-sophia
analogously to our heatmaps in R, we might consider creating NMDS plots by default (if possible, not attempted, will only work if we don't need to provide too many parameters).
…
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Hi, thanks for your awesome reproduction! As mentioned in the paper, it utilizes a so-called co-ordinations to stabilize the training of the agent. However, from the training process, it seems no such…