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**As of 28/02/2022: needs update**
**Ingest:** [KidneyOrganoidsBioprinting](https://contribute.data.humancellatlas.org/projects/detail?uuid=8787c238-89ef-4636-a57d-3167e8b54a80)
**Needs update:**
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Run this against the clickhouse public portal
curl 'http://localhost:8082/api/column-store/clinical-data-counts/fetch' -H 'accept: application/json, text/plain, */*' -H 'accept-…
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### Project short name:
FetalOrganoids
### Primary Wrangler:
@ESapenaVentura
### Secondary Wrangler:
TBD
### Associated files:
* Google Drive: TBD (Brokered directly to arrayexpress)
* Accession…
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Update:
- [x] align known standards and use cases: https://docs.google.com/spreadsheets/d/1rB1rqhpuvypp8AQn1EyL1JkfeANrvPr3/edit#gid=2009685732
- [ ] sample provenance (SPREC, quality)
- [x] addi…
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@arschat tried adding the links to represent organoids in the experiment but the linking did not work and produced 0 lines.
a short debug session with @amnonkhen did not produce results.
@amnonkhe…
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Hi,
I am trying to use cell router for trajectory analysis with Seurat object. Here are the commands and the errors that I am getting.
intestinal_organoids_corrected_metadata
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Hello,
I'm seeking clarification on how to run infercnv with my samples.
I have a count matrix obtained by performing smart-seq2 on three different organoids. Among them, one is an untreated cont…
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I am posting this into an issue in case it might be of general interest.
> Create jpegs failed from MIPS? What could be the reason?
log:
```
Sender: LSF System
Subject: Job 97029065:
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Project UUID: 005d611a-14d5-4fbf-846e-571a1f874f70
Project Title: Assessing the relevance of organoids to model inter-individual variation
Project Short Name: HPSI human cerebral organoids
Submissi…