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I tried to run following given command:
`bash $path_of_the_pipeline/1Genome_construct_Pangenome.sh ref.fa query.fa > job.sh && bash job.sh
`
But 1Genome_construct_Pangenome.sh script is not provi…
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Can you provide a detailed explanation on how to run this process? I am a beginner and don't quite understand. Thank you very much
tttxd updated
2 weeks ago
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"We mapped reads to the pangenome to efficiently capture telomere length across the diverse
population. A references file of 500kb of subtelomere sequences was assembled from each of the
genomes (…
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Hi,
I am getting error when running job with multiple processors.
`-[Arcadia-Science/prehgt] Pipeline completed with errors-ERROR ~ Error executing process > 'ARCADIASCIENCE_PREHGT:PREHGT:build_genu…
onbio updated
1 month ago
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Add Sanger's Roary pipeline to GVL and Galaxy.
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Determine the requirements and potential options for the basis of the Pangenome Annotation RNA-seq pipeline.
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Hi,
First of all, thanks for this amazing tool. Not only, it is fast but is structured so well that it is a joy to use.
This is from your comment in anchorwave repo. I have multiple pairwise MA…
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Just wonder if MicrobeAnnotator can be combined with results from pangenmoe pipeline?
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Dear Professor Hukang,
I am delighted to see that your work has developed a pipeline capable of accurately identifying full-length TEs. I have also been troubled by the overly fragmented TEs annot…
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Hi,
My name is Maggs. We recently generated a pangenome graph. We used soft-masked genomes as input. Since then, we revised the masking. The regions that are soft masked differ rather substantiall…