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### Version
1
### DataCap Applicant
BitsAndBytes
### Project ID
1
### Data Owner Name
Human Pangenome Reference Consortium
### Data Owner Country/Region
United States
### Data Owner Industry…
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### Version
1
### DataCap Applicant
Neal
### Project ID
14
### Data Owner Name
National Human Genome Research Instititue
### Data Owner Country/Region
United States
### Data Owner Industry
…
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calc-hash-presence.py from [pangenome-hash-cor](https://github.com/ctb/2024-pangenome-hash-corr), does not yet allow me to compare protein sketches instead of nucleotide sketches.
I'd like to comp…
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In https://github.com/ekg/freebayes/issues/419 @tseemann [asked if vg was ready for bacterial pangenomics](https://github.com/ekg/freebayes/issues/419#issuecomment-377646948). My response better fits …
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Hi,
For the files in FLAGGER_HIFI_PROJECTED_SIMPLIFIED_BEDS/ directories, are their cooddinate based on T2T-CHM13 (v.2.0) or T2T-CHM13 (v.1.1)or hg38?
For examples, files in here: https://s3-us…
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Hi,
I am trying to run truvari on the hapdiff unphased variants VCF (produced by the haplotype resolved HG002 assemblies) against the HG002 benchmarking VCF. I have given the commands used and the …
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**Describe the bug**
In the output of `vcfwave`, the phased genotypes are not consistent with the input VCF.
**To Reproduce**
Here are some examples of the incorrect phased genotypes.
Inpu…
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Is it possible to use GSAlign to align multiple genomes with each other? Say by concatenating the genomes and using the same file as the reference file and the query file? I know in your paper you rul…
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Hello,
I would like to ask a bit of information about the samples that are in this repository. Are they control samples?
And secondly, I found this repository from the Pangenomics human project. ht…
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I used GraphAligner to align HiFi reads of the sample to the HPRC pangenome. The "vg stats" command revealed an alignment percentage of **90.16%** (6056984/6717677). However, upon examining the genera…