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https://decoupler-py.readthedocs.io/en/latest/index.html
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Can be based on the implementation in scFlow
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- [x] Add column to comparison table for number of libraries
- [x] Add DAVID to list (moved MSigDB to "database-specific" bullet point since we describe it in terms of a data source more than the act…
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Dear nicheNetR Team,
Following my nichnetr analysis, I have generated a list of target genes and I am interested in assigning pathways to these genes. Could you kindly advise if there is a function…
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Lets see if it works to discuss here.
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The people always want subsequent pathway analysis of the DEGs.
I used the
* Piano R package
for this sometimes. What I really like is
* WebGestalt
that we can maybe also use locally…
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Would anyone be against removing these two obviously incomplete and not very good features aside perhaps working more on then Java class mapper ? That seems to sort of work. Anyone else care to weigh …
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**Describe the Bug**
Wnen I use ggpicrust2 function, it always generates the error. Any help would be greatly appreciated.
Here's my dataset including the "pred_metagenome_unstart.tsv" file and "m…
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"relax FDR, comparison w/ w/o cell type, and/or genes"
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In GitLab by @kelsey.chetnik on Jun 15, 2020, 12:23
Extend the functionality of mt_stats_pathway_enrichment.R and mt_stats_pathway_enrichment_with_differential_analysis.R. Talk to Parviz to check wha…