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It was suggested that a function for shuffling the network nodes/phylogenetic profiles would be much of a help.
dizak updated
3 years ago
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Dear IQ-Tree team,
In a [recent paper](https://www.biorxiv.org/content/10.1101/2024.03.29.587376v1.abstract) you have shown that re-estimating the substitution matrix under a profile mixture model …
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https://doi.org/10.1038/nature11503
>The genome-wide identification of pairs of interacting proteins is an important step in the elucidation of cell regulatory mechanisms1, 2. Much of our present kno…
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- [x] Download the Genome from NCBI
GCF_000767585.1_PRJNA234474_Ca_dromedarius_V1.0_genomic.fna.gz`
### LTR-Detection
- [x] **Create index** _find pairs of maximal exact direct repeats that a…
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@YY-SONG0718 to provide details
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Dear developer and other users,
As the title says, I wanna use metaeuk to annotation genome without reference. But I cannot find how to deal with it in manual.
Best
Nana7m1
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Dan Park will take care of this will have him join the group here
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Configuration file: github.toml
Description: VariantTools, software tool for the manipulation, annotation, selection, simulation, and analysis of variants in the context of next-gen sequencing analys…
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### Living_mulch_project
1. The overall goal. To test whether living mulch treatment lead to a more healthy soil microbiome community
Hypothesis to test
1. The soil microbiome community…
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I am trying to run the nextstrain pipeline, I did following steps but I am getting an error.
Step 1. I downloaded seasonal-flu repo and created a directory called "data/h3n2", and placed the fasta …