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Dear developer,
We would like to perform TWAS analysis on a plant population. Our data consists of phenotypes, whole-genome gene expression levels, and genotypes for each sample.
We do not have …
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Dear developer,
We would like to perform TWAS analysis on a plant population. Our data consists of phenotypes, whole-genome gene expression levels, and genotypes for each sample.
We do not have …
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I am a researcher in plant genetics, currently endeavoring to understand the correlation between specific loci and phenotypic traits in plants. In my research, I have collected data on a series of loc…
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[extract-max-extent-around-hashes.py](https://github.com/ctb/2022-sourmash-sens-spec/blob/main/scripts/extract-max-extent-around-hashes.py) is a potentially useful script that does the following:
G…
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The plant trait ontology [TO](https://obofoundry.org/ontology/to.html) is the conceptual counterpart of OBA, but it contains (or will soon contain, as per @diatomsRcool) some phenotypey terms now, lik…
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# Phenotypes, Genotypes & Voxels: A playground next to a nuclear power plant
***By Anqi Qiu, National University of Singapore***
- Theme: Open Workflows
- Format: Keynote
## Abstract
Big data provid…
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```
"predisposition to disease of type X"
is an odd name for a class. Either this is a template - in which case it
shouldn't be represented as
a class in the ontology - or the class is actually "pre…
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We have "penetrance" as an extension option for both gene-for-gene and pathogen host-interaction phenotypes. We don't have "expressivity"
As most terms apply to whole plants, penetrance isn't usu…
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```
"predisposition to disease of type X"
is an odd name for a class. Either this is a template - in which case it
shouldn't be represented as
a class in the ontology - or the class is actually "pre…
-