-
Hello! I was using the following code to simultaneously subset and convert eigenstrat files to plink using admixtools2 v2.0.6
```
eigenstrat_to_plink(
"/nobackup/kvgm94/ADNAcomm/Kelly/eager-o…
-
Hi Steve,
This is a very minor thing but I just wanted to bring to your attention that I noted a possible inconsistency when using a Plink .bed file as input:
My popmap file was based on sample I…
-
Hi GSC's developers,
I've been testing GSC for variant compression and noticed a couple of issues regarding multi-threading behavior and compression performance:
**Multi-threading Issue:**
It s…
-
Add functionality to read binary plink files and convert to numpy, Zarr or HDF5, analogous to existing functions for reading VCF files.
-
Dear Dr. Lin:
This https://rpubs.com/ZhaotongL/cisMRcML_vignette seems quite easy to understand. Thanks!
However, my **exp_df** and **out_df** do NOT have **cor** and **cor_se**. The above tu…
-
Hi, thanks for your excellent tool!
I am wondering about the choice of plink. Should I use the same chr in step1 and step2&3 or just randomly choose in step1? Because I noticed that step1 used chr1 p…
-
Hi all,
I recently met a Segmentation fault (core dumped) error in mtCOJO. It still remains when I increase server memory. The data format and quality have been checked. Has anyone met such kind of p…
-
When I try to convert my bed-files to the genind-format the converter fails, stating some column is missing. This looks like to be a problem connected to the strata-format.
genomic_converter(data …
-
**Describe the bug**
- When using the `multipass.exe` Windows version of the CLI tool, this binary is not supporting any STDIN redirection. Instead it attach directly to the terminal API (or somethin…
-
Thanks for developing this method. I've run into a potential bug where Ne estimates are different depending on the input file. I'm happy to share example files if that is helpful.
In short, given t…