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Hi Brentp,
I have a sample that's triploid. Any plans to allow smoove to be able to given a ploidy before calling?
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Hi Dr. Guan,
I am running purge_dups on a plant genome with more than 30% duplication. The estimated size is 375M, and the assembly size is 450M. Attached are coverage pictures with Nanopore reads.…
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Hello,
Before asking about the problem, I wrote down the basic information below,
- Versions : WhatsHap(2.2) Python(3.10.14)
- I installed WhatsHap via conda
- command-line parameters I used …
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Hi,
I was going through the tool and the article of mHiC and found that it could be the best suited tool for the polyploidy genomes with extensive repeats. Did you all also check the tool over plan…
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Hello,
at the moment I’m analysing paired-end gbs data of plum trees using ipyrad v.0.9.1-dev.
While the pipeline is working well, there is still one problem I couldn’t solve when it comes to the …
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@szhan suggests another use-case for a GIG: to simulate whole genome duplication (WGD) followed by gene loss, so that we can look at the concept of orthodoxy / paralogy. This would require some elemen…
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as per
https://scholia.toolforge.org/topic/Q213410
and
https://api.crossref.org/works?query.bibliographic=polyploidy&filter=type:journal-article&rows=1000&sort=published&order=desc&select=DOI
in…
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hi，thanks for your tool !
Author of said they used hifiasm to get the haplotype-resolved assembly of autotetraploid potato. [https://github.com/baozg/Potato_C88]
I want to ask which version of…
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Hi, your websites indicate that tools such as vcf-stats do support polyploids, but when I run the script I get the following error message: "FIXME: currently handling diploid data only (easy to fix)".…
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### Author(s) of proposal
Carl Rothfels
### Name of taxon
xApseudathyrium, xCornoathyrium
### Rank of taxon
Nothogenus
### Approximate number of species affected
4
### Description of change
R…