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Option to build custom proteases does not provide an indicator that "Save" was hit. This results in duplicate entries in Protease text folder. When these occur it causes Guru to not start. Manually…
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Dear developers,
thanks for providing this great tool! I have used your package for a while now, but when thinking a bit more about my results, I was wondering how exactly the ligand-target-matrix…
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The tutorial notebook of basic settings in alphabase:
1. base DF structures
2. spec libs
3. HDF5 storage
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`sst2 human AMSH/STAMBP protein ubiquitin specific-protease` is in the ncbi_cleaned_gene_products list, but it throws a fatal error in the discrepancy report:
```
FATAL: DiscRep_SUB:SUSPECT_PRODU…
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MBR attempts to map identifications from one run onto peaks in another run. This is incompatible with the multiprotease search because it does not make sense to map IDs from one protease onto another …
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Enterovirus D68 3C protease has a broken uniprot link that appends '(closest match)' to the URL.
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Dear Author,
I hope this message finds you well.
I recently had the pleasure of reading your paper, "Learning on topological surface and geometric structure for 3D molecular generation", publish…
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Amino acid sequence module. Show protease cut markers. Show automated annotation, including secondary structure prediction, Chou-Fasman, coiled-coil prediction, etc. Allow backtranslation into DNA, ba…
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Creating this thread to post potentially useful info about _Pichia pastoris_/_Komagataella phaffii_ that people come across.
Quick background: _Pichia pastoris_ (now named _Komagataella phaffii_) i…
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PoPS
pops
The PoPS project is a set of computational tools for investigating protease specificity. The main PoPS program allows users to model and profile protease specificity an…