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I perform a wide-scale test using the recommonded scripts " ./toga.py test_input/hg38.mm10.chr11.chain test_input/hg38.genCode27.chr11.bed test_input/hg38.2bit test_input/mm10.2bit --kt --pn test -i …
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- [ ] on hold till we have enough diagnostic samples (300 Samples)
- [ ] check region of DarkMatter paper on LR data
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Does Dfast identify pseudogenes?
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Four of the gene symbols listed as dark kinase (Tdark) refer to pseudogenes, but this is not reflected in the display in the shiny app.
PRKY
https://www.genenames.org/data/gene-symbol-report/#!/hg…
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Hi,
Thanks for this fantastic tool. I would like to bulk download all the available files of pseudogenes (*_pseudo_without_product.fna.gz). As far as I understand, this file type is not supported …
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Hello,
I want to use EviAnn for some test data I have for Citrus Sinensis and I followed the instructions on the README page but I am encountering an issue I have not been able to resolve. I keep …
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There are some pseudogenes in RECON3D which don't belong there and should be removed from the genes and the gene associations:
https://vmh.uni.lu/#gene/645740.1
https://vmh.uni.lu/#gene/8781.1
ht…
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@rachellyne Look at this gene:
https://beta.humanmine.org/beta/pseudogene:gene0
This isn't a bug, this feature is being created correctly (given the config we have). The feature comes from the N…
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| Exercise | Description | Completion |
| -------- | ------- | ------- |
| Q1A | Code present |YES |
| Q1B | `protein_coding` genes count correct | NO |
| Q1C | Discussion of interesting `biotyp…
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Hi,
I tried to run EviAnn with bam alignments, protein seq, and fastq reads as evidence to annotate a genome but keep getting the following msg:
ls: cannot access 'tissue*.bam': No such file or di…