-
Hi all! Really thanks for your open-source HelixFold3. I'm wondering that does HelixFold3 support PTMs prediction now like AF3? Thanks for your help and response.
-
Hello,
With the capabilities in the new version, I am interested in using DIA-NN to search for histone PTMs from extracted histones. The since histone tails are highly decorated with PTMs, the main…
-
@DeniseSl22, what is the MIM approach for post-translational modifications of proteins, like this in [WP4673](https://www.wikipathways.org/index.php/Pathway:WP4673):
![image](https://user-images.gi…
egonw updated
5 years ago
-
Hello,
When using the Fragpipe, I have a problem with the modification setting. How to set a modification not C-term, like this in Spectronaut?
![Capture](https://github.com/user-attachments/asset…
-
Throughout PSI-MOD, when a heavy labelled atom is added in place of a "regular" atom, it's listed as
(12)C -X (13)C X , where X is the number of atoms being replaced.
Technically this is wrong,…
-
The peptide sequences can be filtered by PTMs, you can search by a pattern expression and also a PTM see documentation here https://spectra-ws.readthedocs.io/en/latest/find_ptm.html
For that, the u…
-
I think we should modify how Casanovo reports PTMs in its predicted sequences. Ideally, we would be compatible with the Proforma specification:
https://github.com/HUPO-PSI/ProForma/blob/master/Spe…
-
@cschlaffner :
We have an ongoing project to release PTMs and single aminoacid variants coordinate at genome scale. The idea is that the users gave a region of the genome and we can trace all the …
-
`
[21:45:23] [Server thread/ERROR]: Could not pass event AdyeshachEntityVisibleEvent to Adyeshach v2.0.0-snapshot-36
java.lang.IllegalArgumentException: null
at com.google.common.base.Precondition…
-
Hello,
I am trying to create an in-silico predicted spectral library in DIA-NN and I am interested in detecting variable carbamylation of lysine (K) and arginine (R), as well as the carbamylation a…
buijt updated
10 months ago