HUPO-PSI psi-mod-CV issues

HUPO-PSI / psi-mod-CV

Reactivated PSI-MOD ontology for molecular mass modifications

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issues

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How to describe proteins conjugated with thioredoxin peroxidase?

#76 ValWood opened 8 months ago
0
NTR: ubiquitinylated cysteine

#75 srengel opened 1 year ago
0
NTR: isgylated L-lysine

#74 rwst opened 1 year ago
0
MOD:00312 'S-myristoyl-L-cysteine' hypothetical or natural?

#73 nataled opened 1 year ago
1
Revisions needed for MOD:00647 "monoacetylated L-serine" and MOD:02080 "diacetylated-L-serine"

#72 nataled opened 1 year ago
0
Missing PSI-MS-label on MOD:01458

#71 dtabb73 opened 2 years ago
2
Create LICENSE

#70 cthoyt closed 2 years ago
2
Update UniProt PTM xrefs to use CURIE syntax

#69 cthoyt closed 2 years ago
19
UniProt PTM references are not written as CURIEs

#68 cthoyt closed 2 years ago
2
some "not great" ntrs from the iedb

#67 rvita opened 2 years ago
3
Add script to generate a new-style OBO file from `PSI-MOD.obo`

#66 althonos closed 2 years ago
0
NTR: N-methyl-L-valine

#65 althonos opened 2 years ago
1
Fix synonym used to map `MOD:00190` to UniProt modifications

#64 althonos closed 2 years ago
1
Consider using property-value for annotated properties

#63 althonos closed 2 years ago
13
NTR: glutaminylated residue

#62 srengel opened 3 years ago
2
Add obofoundry topic to repo metadata

#61 cthoyt closed 3 years ago
3
ProForma needs a generic MOD term for isoasp crosslinked peptides

#60 pmt706 opened 3 years ago
0
Collagen-related mods

#59 pmt706 opened 3 years ago
1
D-amino acids

#58 pmt706 opened 3 years ago
3
missing character

#57 pabinz closed 3 years ago
3
Feb 2021 Error Fixes and New Mods

#56 pmt706 closed 3 years ago
4
PSI-MOD January Cleanup

#55 pmt706 closed 3 years ago
0
Duplicate Names for sugars

#54 pmt706 closed 3 years ago
4
Deorphanize or Deprecate Terms Rooted at MOD:00003 and MOD:00947

#53 pmt706 opened 3 years ago
1
General Cleanup and error correction

#52 pmt706 closed 3 years ago
0
Fix remap on MOD:00603

#51 rfellers closed 3 years ago
1
Heavy Isotope Labeled PTMs

#50 pmt706 opened 3 years ago
1
Update to fix transitive property errors

#49 pmt706 closed 3 years ago
0
Fixes Acetylation, Nitration, flavins

#48 pmt706 closed 3 years ago
0
Mass Differences... Are they a transitive property?

#47 pmt706 closed 3 years ago
10
Minor changes to PSI-Mod, corrections for errors

#46 pmt706 closed 3 years ago
0
Updates Versions and OWL and includes changes from other PR's

#45 pmt706 closed 3 years ago
2
Fix part_of relationship syntax

#44 kimrutherford closed 3 years ago
1
Add missing is_obsolete field

#43 kimrutherford closed 3 years ago
2
Light(ish) Ontology Cleanup

#42 pmt706 closed 3 years ago
1
depracated obo.xml

#41 trishorts closed 3 years ago
11
Adding xrefs to UniProt's PTMList and publishing our first OWL

#40 pmt706 closed 3 years ago
5
Gno cross reference terms added

#39 pmt706 closed 3 years ago
0
Our OBOFoundry link points to an old version of the PSI-MOD.obo file.

#38 pmt706 closed 3 years ago
4
Monomethylated Histidine Fixes

#37 pmt706 closed 3 years ago
2
Adding glycans for SARS-CoV-2 as requested

#36 pmt706 closed 3 years ago
2
Adding new terms for cis-trans prolines

#35 pmt706 closed 3 years ago
2
Deprecate the OBO.XML file

#34 pmt706 closed 3 years ago
0
Trimethylation not on N-term

#33 rfellers closed 3 years ago
2
Adding AVERAGE Itraq4PLEX MOD

#32 pmt706 closed 3 years ago
0
AVERAGE Itraq4PLEX MOD

#31 pabinz closed 3 years ago
2
Replaced all UniMod with Unimod

#30 pmt706 closed 3 years ago
0
Trimethyl and formal charges

#29 rfellers closed 3 years ago
6
follow up on SF ticket re proline isomerization

#28 ValWood closed 3 years ago
10
Adding new protein modification

#27 pmt706 closed 4 years ago
1