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Hey guys, thanks for the software.
I was following the tutorial for mapping long reads and calling SV.
All good for the first part, but I noticed that when I was launching the vg pack using the .gbz…
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Hi,
I am circling back to Biobloomtools, hoping to use it for a contamination screening.
Could you please provide more info on whether it's possible to use it for long reads and what the FPR and K…
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Hi, I´m trying to use polyconvert to generate TAZ definition from a shapefile.
The shapefile was generate using EPSG:4326
I´m passing the network as parameter too, so polyconvert calculate de pr…
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## The need
I was profiling a bam file when I noticed that a massive amount of my reads were not used:
```
WARNING
====================================================
There were 553 reads pres…
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> AWS Lambda announces new Amazon CloudWatch metrics for Lambda Event Source Mappings (ESMs), which provide customers visibility into the processing state of events read by ESMs that subscribe to Amaz…
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**Please describe the problem you are trying to solve.**
Simplify the mapping configuration by removing the unnecessary (?) `direction="read"/"write"` attribute.
**Describe the solution you propos…
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@jeizenga
hello, I read about issues with mapping long reads for pan-genomes, so I was wondering if the new version of vg giraffe supports mapping long reads.
[https://github.com/vgteam/vg/…
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File stream:
- Open a file write only, write a string, close, open read only, read, check content, close
- Open a file write only in gzip mode, write a string, close, open read only with auto gzip m…
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hi @jguhlin,
In this wrapper, is there a way to use interleaved reads (or forward & reverse reads) as input since I only saw single fasta as input.
Thanks,
Jianshu
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Hello,
I executed the SqueezeMeta 1.70beta8 workflow on 98 MAGs using the -extbins flag. It appears the sqm_counter read mapping step is taking an excessively long period of time, about 5 hours or …