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The following is my code
`kraken2-build --download-library bacteria --db bacteria`
`kraken2-build --download-taxonomy --db bacteria`
`kraken2-build --download-library plant --db bacteria`
`krake…
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I would suggest rebuild metabuli viral reference database using current official viral taxonomy provided on https://ictv.global/vmr
Technically, it is not difficult.
Your tool processed it very smo…
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Thanks for writing `taxor` and including useful databases!
What the community (or maybe just me) really wants is a database that covers more of the microbial kingdom, but with the benefit of GTDB f…
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When using RefSeq merged cache for GRCh37, VEP returns outdated symbols of some genes, even though the same genes are reported with the updatd symbol in RefSeq GFF.
For instance, genes IKBKAP and D…
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See https://github.com/auerbachs/BMDExpress-2/wiki/Additional-Information#supported-microarrays
Current list should be:
|ID |…
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This may be possible. Figure out a way to incorporate it if possible.
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**Describe the bug**
We noticed that there are MT variants that have been annotated with Ensembl information but the RefSeq information is empty. We need to double check why this is. For example:
…
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What version of RefSeq database is downloaded/used in the annotation cache when executing: `dotnet Downloader.dll --ga GRCh37 -o Data`? Is there a way to control/leverage a specific transcript databas…
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I have used liftoff using the annotation file of GRCh38.p14 and liftoff was running normally without any problems. But when I used chm13v2.0_RefSeq_Liftoff_v5.1.gff3 (after some tests, I found it was …
yeeus updated
3 weeks ago
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Dear All,
I want to use the Ensemble gene list instead of refseq with hg38 assembly, is there a way to create a similar file as yours with the TSS being the largest region that contains all possib…