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Dear developers,
I have paired-end sequencing fastqc files from different samples and I would like to perform the phylogenetic abundance table based on the GTDB reference. Your singlem pipe tool ha…
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Zou & Rudolf 2024 say: Priority effects: scenarios where the outcomes of species interaction depend on their relative arrival times or initial abundances.
But I wanted to compare to McPeek book def…
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Hello! This is my first time using FUNGuild and I would like to know more about the ASV input table. Should I use read counts or relative abundances? I am trying to check this by opening the example O…
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https://github.com/vjjan91/nilgiris-resurvey-project/blob/916ead6085b23d12d5650c17f63404c6fa7fdc95/code/xx_relative-abundance-envtChange.Rmd#L6C1-L6C10
@pratikunterwegs I have currently removed thi…
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**Improvement Description**
This would be consistent with what is shown in the barplots and is more useful than absolute counts (e.g., if a user wants to download and generate the same plots outside …
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Hello,
I would like to know if this tool gives the output file containing relative abundances of strains per sample.
Thank you
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Dear author,
I am very interested in your work and have encountered a few questions while reading your paper. This research calculated the relative abundance of FESNov gene families in 575 human g…
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Goal: Benchmark 'sourmash --track-abundance' to determine if the relative abundances reflect true abundances using a synthetic dataset with defined abundances.
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I am getting an error when I perform "change.sigindex" using the following code.
Could you tell me exactly which data in detail is not numeric and thus the error is occurring?
> icres3=iCAMP::chan…
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Hi there, thanks for sharing this tool! It worked really well with my data after checking the PCoA plot. I have two questions regarding the downstream analysis though:
1. After using the tool and n…