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### Aims/objectives.
The nomenclature for RNA types (table `rna_type`) is fixed *e.g.*
```mysql
+---------+-------------------+
| id | name |
+---------+-------------------+
…
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Corals for 116 _stranded_ RNA-seq libraries
Sending RNA
20M reads
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Hello,
I was working on the stereo-citeSeq data, and I am using "stereoPipeline_pt_v7.1. The pipeline worked well and generated the report. However, I have a question about the multiomics analysis …
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I'm wondering if there is concise documentation somewhere for reproducing the exact analysis of the TCGA/GTEX data in this [paper](https://www.nature.com/articles/nbt.3772) (but with new samples).
h…
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# Update May 28th
Today, I was able to complete the pipeline up till deseq2 or possibly featurecounts. The Star script is finished, and now, within the Star rule, I am using samtools to separate th…
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Thank you very much for your help, thank you
I want to know if this tool can handle RNA-seq data, or can it only handle single-cell data?
I wish you good luck with your research
l1y1y updated
1 month ago
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I have very basic questions.
I already generated loom files using velocyto from cellranger filtered matrix and bam files. Now if I am interested in running SoupX, do I need to rerun velocyto afte…
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**Steps to Reproduce**
1. Open RNA builder
2. Click New Preset button
3. Select Phosphate (P in my case)
4. Select Base (A in my case)
5. Select 3SS6 sugar
![image](https://github.com/epam/ketch…
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- https://github.com/broadinstitute/gtex-pipeline/tree/master/rnaseq
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When I create an RNA_DeNovoProtocolMover() using a Python script, it stops running and throws an error with code ‘139 (interrupted by signal 11:SIGSEGV)’ either during initialization or when applying …