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### Enzyme, ADAR (proof-read and correct mistakes in RNA)
[**ADAR editing enzymes** are found in all multicellular animals and are conserved in sequence and protein organization. The number of ADAR g…
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Hi,
I am testing REDItools3, which I assume it has similar input requirements as its predecessors. I am running the folowing
python -m reditools analyze -t 20 -s 0 -mrl 50 -os 5 -q 20 -bq 20 -mb…
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I meet a problem when using RNAEditingIndex, the log file told me that program run failed for samtools sort failed to read header from "-", This is my command with the example bam files:
`./RNAEditin…
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Thanks for developing REDItools2. It’s a nice tool to use. I’ve got some questions about using the tool.
I have 2 groups with 3 replicates in each group. I identified RNA editing events in each sa…
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Hi,
I got a segmentation fault when running STAR_ALIGN_FIRST_PASS.
I found this was because my RNA reads had been trimmed and hence not a single length. When calculating the overhang from read l…
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In the Step 5 - Single Nucleotide Variant calling cell by cell,
Could you tell me what the role of the SNPs descriptor file is?
Does it is the SNP calling results at the overall sample level, or is…
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Hi SPLASH,
**updated from my initial post**
I've started to run your pipeline and am now stuck on the `SPLASH_extendor_classification.R` and am troubleshooting line-by-line.
Using the paramet…
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Hi,
I am currently trying to apply your approach to identify potential RNA editing regulation in our own RNA-seq data, however I am having issues generating a list of editing sites.
Could you ple…
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**SO term name and accession**
gene_with_edited_transcript (SO:0000548)
**Current parent term name and accession**
protein_coding_gene (SO:0001217)
**Suggested new parent term name and accessi…
sjm41 updated
3 years ago
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**Steps to Reproduce**
1. Switch to Macro mode
2. Make Zoom browser as 125% (Monitor Scale =125 125% )
![image](https://github.com/epam/ketcher/assets/161723514/f5aba8c0-8e14-4893-b62a-8d6d6368946c…