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Hi,
Thank you very much for great tool!
I have encountered error when using DFAST for rRNA prediction - no rRNA genes in output.
DFAST was run in debug mode and this is my barrnap log output:…
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This might not be an issue for feature tables from genbank, but for other sources (for example from prokka), a particular row may contain more than two lines. For example in the following it would be …
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Funannotate pipeline is awesome. I have two queries.
1) how to incorporate results of Barrnap (rRNA prediction) in final genebank and other annotated files.
2) Add tool to generate circos plot of…
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1. Compare predictions with reported source
2. Quantify accuracy: correct, false, undecided
One goal is to minimize false predictions. Here we can try playing with `--library-source-min-match-perc…
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- The issue is related to the user-provided proteins feature and its associated issues.
- I am trying to use bakta to perform annotation on a phage predicted protein file that used Phanotate. I wa…
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> Taxonomic assignment is the core of targeted metagenomics approaches that aims to assign sequencing reads to their corresponding taxonomy. Sequence similarity searching and machine learning (ML) are…
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Thanks for this usefull tool, I'm going to use it to annotate my sequence.
However, I'm puzzled about the params `[-t {contig,protein}]`, it seems that in `contig` mode, input will treated as nucle…
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I use your tool "Prokka" (version 1.10) with your the default rRNA predictor "Barrnap" mainly for metagenome-annotation (and am very happy with it).
As my metagenomes consist of bacterial as well as …
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Hi there,
I'm annotating a few genomes and I realised that funannotate does not have any integrated tool for annotating ncRNA other then tRNAscan-SE. I will be annotating ncRNA through [Infernal](h…
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Important:
- Which model should be our core model?
- What figure/table should be in the main text or supplement
- should we store the models/ datasets somewhere zenodo
- should we give a possible …