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I've been playing around with GARD and ran it on 10 and 20 randomly sampled Pango sequence founders.
When I tried it out on 27 sequences, however, I got an error:
```
hyphy gard --alignment sa…
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https://grlc.io/api-git/egonw/SARS-CoV-2-Queries/subdir/grlc API is not working https://github.com/egonw/SARS-CoV-2-Queries/tree/master/grlc
Reported by @egonw
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The [preprint](https://www.medrxiv.org/content/10.1101/2024.04.22.24305845v1) contains fecal shedding data for human mtDNA, PMMoV, and SARS-CoV-2 in fecal samples for 42 inpatients.
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Dear @joicy,
Could I know where to find `https://github.com/joicy/SARS-Cov-2-Africa-dashboard` repository?
Thanks.
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## Problem statement
" AK received 2 recent messages through their feed that caused a failure in the system. We have the message ID’s as well as the accession and the issue that was encountered with …
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I worked a bit on the labelling matching with ENA / NCBI as I had a lot of mismatch issues with the development of the FAIR Data Station. I forked the repo and did an analysis on the terms in MIxS and…
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We need to annotate manually-curated molecules with the following information:
- Target: mPro, Spike, ...
- Phenotypic Assay: 0 or 1
- Target Assay: 0 or 1
- Docking: 0 or 1
- IC50: value in uM…
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from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1603
![image](https://github.com/user-attachments/assets/841ee3cc-f216-487f-bcd9-ad1ccb1c7ce4)
tree: https://nextstrain.org/fetc…
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Hi @GemmaTuron ,
As agreed, we should check the REDIAL model (or any other SARS-CoV-2 model that we have in the hub) and run it in our chemical spaces.
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From branch 6 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1771
LB.1.7+G22132T(S:R190S)
GISAID query: G22132T, G22111T, C4784T, -22096,-16376, G11727A
No. of seqs: 17(USA, 1…