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_https://github.com/sars-cov-2-variants/lineage-proposals/issues/991 Part I
https://github.com/sars-cov-2-variants/lineage-proposals/issues/1675 Part II
https://github.com/sars-cov-2-variants/lineag…
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Especially for future automatic aggregation purposes, it would be nice to be able to access something like genetic distances or imputed mutations on branches of the taxonomy tree.
- Possibly from htt…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/2084
Recently I train a GPT model on viral evolution for SARS-Cov-2 using data up to early-JN.1, and T22119C-S:F186S is its top …
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Liebe Nutzer:innen,
am 23.10.2024. wird es eine Anpassung dieses Datensatzes geben. Hintergrund ist, dass an einigen Kläranlagen seit Oktober 2024 auch Influenzaviren im Abwasser erfasst werden. Da…
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https://grlc.io/api-git/egonw/SARS-CoV-2-Queries/subdir/grlc API is not working https://github.com/egonw/SARS-CoV-2-Queries/tree/master/grlc
Reported by @egonw
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Hello,
We've been encountering validation errors with the CanCOGeNCovid19 template in versions 5.4.2 and 5.4.1 where the host age is being highlighted if the value is "Missing" and the host gender…
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**Is your feature request related to a problem? Please describe.**
We need to run SARS-CoV-2 through SneakerNet
**Describe the solution you'd like**
A new workflow with new plugins
* Amplicon-…
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Hello,
I noticed that the file 'sera_343C_mediumACE2_mut_effect.csv' in your repository contains the same columns as 'sera_343C_mediumACE2_mut_icXX.csv', such as 'Lib2-230815-sera-343C_mediumACE2'. H…
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Dear nextstrain team,
First, thank you for your work!
We recently updatated our nextclade sars-cov-2 classic dataset (from 2024-06-13T23:42:47Z to 2024-07-17T12:57:03Z).
however, our last seque…
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From branch 21 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502
and branch 4 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1771
This used to be a UK clu…