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I am seeing an issue with foldseek version "v9.427df8a" when using "--format-mode 3" to generate an html output. In some cases the interactive protein alignment visualization is missing from the outpu…
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Dear Professor Chen,
First of all, I would like to thank you and your team for developing ERVcaller, which has great assisted my project.
Recently, I am trying to assemble the inserted virus seq…
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The hgvs library has a built in (text-based) visualization, which allows to build a view of the context of a variant with the alignment between the transcript and the reference genome. It can create r…
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@gregcaporaso, @Kleptobismol, and I chatted awhile ago about adding a plotting method to `Alignment` to create a [sequence logo](http://schneider.ncifcrf.gov/sequencelogo.html). This could be a really…
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Please respond (or comment) to this issue to report anything (bugs, glitches, ideas, feedback, etc) about the online tree visualization demo at:
http://treeview.etetoolkit.org
Major Ongoing wor…
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Webservice that chooses a reference sequence based on
Input:
1) HLA (or other) consensus sequences. full length or features.
2) IMGT version.
Output:
1) Best matching reference sequence
2) …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/daewoooo/SVbyEye
Confirm the following by editing…
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User should have the ability to view any found match (alignment) at a track (graphic visualization) in the "Browser" panel.
To open the visualization form, user should click the "**View at track**" l…
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Hi,
Thank you so much for this amazing package!
I was wondering if there is a way of making the alignment plot wider (i.e., bigger in width, than in height).
I am working with a matrix of 200 se…
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I used pysam to output the SNPS at locus 22218574 of the reference genome, but the output reads were fewer than what I visualized with IGV. The results of pysam were many fewer reads. Why?
Here is th…