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Thank you for developing this excellent software!
I have 20-30 genomes and about 100 long read ONT data. However, the long reads and genomes are not sequenced from the same individual, but belong to …
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I am working on measle disease and want to retrieve metadata from sequenced genomes via the following command :
`datasets summary virus genome taxon 11234 --as-json-lines | dataformat tsv virus-geno…
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Hi,
we recently sequenced a batch of 19 fungal isolates. I tried to assemble the genomes a few different ways (simplex + duplex or simplex corrected only) in order to figure out if there is still a…
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We sequenced and assembled the chromosomal level genomes of two Malus crabapple cultivars, 'Flame' and 'Royalty'. How to enable HSE to include and search these two genomes?
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Hi @ctb the sourmash author,
Currently we are working on using your tool to find the representative MAGs within a customed data set assembled from several deeply sequenced stool shotgun samples. Th…
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Hi there! I'm attempting to perform a homology search for a single gene (a bacterial protein) across all sequenced bacterial genomes to estimate the % of species that carry the gene. Is there a way to…
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Hello
Could you please help me to run your pipeline? I only have one gene that I would like to find its orthologs in 136 sequenced plant genomes.
Do I need to download the sequenced genomes (in …
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Hi,
I have Pacbio FLNC reads in fastq format. What options should be specified while running the tool. I was thinking
`--data_type pacbio --fl_data`. Is this correct?
Thanks
Abhijit
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Hi,
I'm wondering if Bandage works well on genomes sequenced via Truseq and with 10x chromium, assembled with Abyss and supernova, respectively? I ran several assemblies of Truseq short-read whole …
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