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To support the definition of multiple target sequences for a single MaveDB score set, mavehgvs will need to support multi-variants across multiple target sequences.
The nomenclature for doing this is…
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Dear HiPhase :
I attempted to use bcftools to generate haplotype sequences, but the process was unsuccessful. Are there alternative solutions available? Below is the code I used:
bcftools consensus …
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Hello,
Thank you for DADA2.
I have my output table of ASV sequences and their abundance following chimera removal. However, what I would really like is a way to get the original sequence names …
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I am getting the above error even though the region is present in my data. What could be wrong?
```bash
./LDBlockShow-1.40/bin/LDBlockShow -InVCF haplotype_gene_quantification/g3_variants/haptags_…
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Transferred from sars-cov-2-variants/lineage-proposals#1971
JN.1.67.1> G1126A> T21738C(S:F59S), G22599C(S:R346T)
Query: T21738C, G22599C, G26660T
It's placed under JN.1.67.1> G22599C> T21738C y…
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Transferred from sars-cov-2-variants/lineage-proposals#2173.
## XEC> G2060A(Orf1a:A599T)> G28378T(Orf9b:R32L)
Query: -C1684A, T3565C, C19716T, G28378T, -C6701T, -C18687T, -A21766T, -G25234T
("-"s…
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It seems that deserialization of sequences into variants broke in version
0.4.0, since tables are now assumed to be maps in deserialize_any.
As a result, the following test case triggers a FromLua…
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Although not used in any rules yet, we would like to support the following modifiers for sigma support completeness:
- `utf16|base64offset|contains`
- `utf16be|base64offset|contains`
- `utf16le|b…
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GISAID query: C14757T,G16221T
No. of seqs: 5 (4 from Saskatchewan, 1 from Ontario, 1 from Alberta)
First: EPI_ISL_19446125, Saskatchewan Canada, September 8
Latest: EPI_ISL_19494753, Ontario Cana…
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@EamonnOCearnaigh
As I mentioned in the discussion the other day would be great if we have a logic in the tool that if the user uses the MM options `-mm NUM` to allow missmatches and the query pep…