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Opening an issue to triage the segfault that seems to be happening in th SGE tests.
For some time the SGE tests have been failing. When you look at the logs of [a recent run](https://github.com/das…
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### Operating System
Windows 10
### Other Linux
_No response_
### Workflow Version
v24.04.2
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No response_
### EPI2M…
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I'm tracking down a very obscure error, where about 30% of submitted jobs, go into the `Eqw` state.
The error is always the same,
```-bash-4.2$ qstat -j 668 | grep error
error reason 1:…
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dask without progress bar is working well on ips and local BCBL.
Needs to test:
how to change config.yaml so that -N will give cluster job a proper name.
how to change config yaml to let SGE …
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Hello,
I am trying to run YAMP on a cluster of type SGE. It put these information in "process" part of the nextflow.config file :
executor = 'sge'
queue = 'batch,batchbm'
I get the followin…
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## Prework
* [x] Read and agree to the [Contributor Code of Conduct](https://github.com/wlandau/crew.cluster/blob/main/CODE_OF_CONDUCT.md) and [contributing guidelines](https://github.com/ropensci/…
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### 📜 Description
while testing the SGE on private clusters, we found some issues with AWS specific annotations that worker-operator is adding.
```
// Note: Special treatment for AWS EKS cluste…
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Hi,
I am using a large server cluster (SGE) with more than 50 nodes to run Verkko computations. Each node is equipped with 72 CPUs and ample memory. **I’m trying to figure out how to utilize all 50…
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In SGE land, parallel execution environments ``-pe smp `` are assigned memory on a per-slot basis. Right now, as the memory requirements increase for a pydpiper executor, more memory is requested for …
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Hello!
We are attempting to use FRASER on a cohort of 400 samples. We've been experiencing issues completing FRASER when sending the job to our sge queue, even when providing 1.5TB of memory. It se…