-
Review articles with lists:
* https://www.sciencedirect.com/science/article/pii/S0002929721000951?via%3Dihub
* https://www.nature.com/articles/s41580-021-00382-6
Websites with lists:
* TR-gnomAD's li…
-
There is a recurrent rearrangement found in all my calls for the DUX4 unknown partner. Is this a known false positive or am I misunderstanding something? Has this been found before?
-
Hi,
Thank you for developing the excellent `TRGT` tool. I've read your paper "_Resolving the unsolved: Comprehensive assessment of tandem repeats at scale_". To gain a better understanding, I've als…
-
Hi there,
I am interested in this amazing tool. I am wondering whether there are any limitations regarding the length of each tandem repeat. Specifically, I would like to detect a 67-bp tandem repe…
-
I am failing to detect a long tandem expansion expansion in STR region.
All other tandem repeat expansions are detected as expected but they are much shorter and covered by at least some spanning…
-
Dear @readmanchiu,
The [Variant Call Format Specification v4.4. and v4.5](https://samtools.github.io/hts-specs/VCFv4.5.pdf) were released recently. One of the major changes is support for (short) t…
-
**MIBiG ID**
BGC0000627
**Short summary**
Add publication
**Literature references**
"Tandem repeats in precursor protein stabilize transcript levels and production levels of the fungal riboso…
-
Hi, I have a 62kb deletion that is very obviously heterzygous but sniffles is calling it as homozygous even the coverage field its's obvious its heterozygous..... anybody have an idea what to do, or i…
-
Basically I have a somewhat plausible long read assembly with several tandem repeats. When feeding it to Unicycler w/ `--existing_long_read_assembly` together w/ Illumina short reads, the assembly get…
-
Hello, here's my issue:
I ran tandem-genotypes on long reads (Oxford Nanopore) on a RepeatMasker locus and obtained this result:
`
chr11 70487135 70487173 TGC SHANK2 coding 0,0,0,0,0,0,0,0,0,0,…