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### Description of the bug
Hi, nice work with this pipeline!
I was trying to run the test profile, but could not get the `datazrd` or `pysam_pandas_pip_variant-extractor` containers downloaded autom…
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Dear Team,
I work on offline cluster. Best option for me to use bioconductor packages is to download singularity image of collection of bioconductor package and transfer it to my offline cluster. Doc…
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I had trouble running a GUI over untrusted (`ssh -X`) X11 forwarding. The container was launched as a slurm job, which may interact with this. The container was launched with
```
singularity --sil…
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* toil_container version: `1.1.7`
* Python version: `2.7.15`
* Operating System: `"Red Hat Enterprise Linux 8.6 (Ootpa)"`
Getting this error:
```console
Traceback (most recent call last):
Fi…
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Unable to find image 'quay.io/singularity/docker2singularity:latest' locally
latest: Pulling from singularity/docker2singularity
docker: no matching manifest for linux/arm64/v8 in the manifest list …
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Build singularity/apptainer images for this pipeline.
See our [BCCDC-PHL/routine-assembly](https://github.com/BCCDC-PHL/routine-assembly) pipeline for an example of how to build apptainer container…
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Apptainer containers and also Dockerfiles for Wochenende and haybaler are available here:
https://drive.google.com/drive/folders/1mdSuS1RdYSMQN5SnNuArXZ-1a7GxvNzO?usp=drive_link
TODO - The confi…
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## Proposal Summary
The proposed feature is to provide integrated support for [Singularity](https://sylabs.io/docs/) in ClearML. Singularity is a powerful tool for packaging and running reproducible …
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Just a few things that would be useful to have in the notebook:
- [ ] What is styx?
- [x] Mapping of singularity containers (Note downloading of singularity containers)
- [ ] DummyRunner
- [x] H…
kaitj updated
1 month ago
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Is your feature request related to a problem? Please describe.
Several of the environments I would like …