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From proposal:
Integrating new microbiome data types
Through discussions with users, we learned that there is a desire for the NMDC to house new data types, specifically data types that do not fit…
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Hi,
I'm using SourceTracker in R for the first time and can't work out an error I'm getting when using the sourcetracker() function on my own data (works for example data though):
Error in if (s…
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### Living_mulch_project
1. The overall goal. To test whether living mulch treatment lead to a more healthy soil microbiome community
Hypothesis to test
1. The soil microbiome community…
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##Branch
g1.02-studyExperiments
## Groups
Group 1 - Content Types | Ontology | Fields
## Describe
This issue provides the content types and fields expected for the Grassland Genomics gr…
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Hi,
I am very interested with the soil-specific microbiome. Can you also share the RAST annotated genome files (gbk files) to me?
Thanks,
Xiangchen Li
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## Earth microbiome project
Dataset link: http://www.earthmicrobiome.org/data-and-code/
Region: global
Taxon: bacteria and fungi
Type: metadata
Why is this important: this project was a global at…
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I am trying to do the statistical tests for soil microbiome data with an unbalanced sample size among groups.
I have also seen two packages in R (PERMANOVA and recently RRPP) to test differences b…
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Hi,
I have human skin microbiome data (ASV table). Can we use the Sourcetracking tool to see how much percentage of taxa coming from let's say soil?
As I can see from the tutorial, in an abundance …
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@mslarae13 @cmungall @sierra-moxon @aclum
This issue describes a technique I can use to infer `env_package` annotations for Biosamples that don't have one, which in turn should improve the `env_lo…
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Hi,
I individually assembled 30 metagenomic soil samples collected from different sites cross the country. Is it reasonable to mapping all samples to a specific assembly to calculate coverage depths …