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Hi,
Thanks for creating such a great tool, love the pre-print.
I'm thinking about applying this method to some CosMx data. I already have a pipeline for importing CosMx data into squidpy and th…
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Dear Seurat team,
I am using Seurat v5.1.0 to analyze HD Visium data, which consists of two biological replicates from a spinal cord sample. We hope to combine/integrate the two datasets and …
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Hi all! In a couple of weeks, I'd like to follow up Jamie's recent **R spatial workshop** with round 2, in which we will focus on manipulating vector spatial objects, especially polygons and shapefil…
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This issue outlines 5 tests to be used as a minimum test set that can be manually run in the ccviR app prior to release. These 5 tests have been designed to check that a range of app functions work pr…
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Hi,
I have zero-inflated data which lead me to your package for BRT analysis. However, there is also spatial autocorrelation in my data. I currently use the `fold.vector` parameter in `gbm.step` (d…
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Hi,
I am using GESECA for my spatial transcriptomic data analysis and am interested in determining which pathways are upregulated and which are downregulated based on the results. Is there a way to…
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From Chris Shults (+ my edits for gEAR purposes)
gEAR would be most useful for users to compare their scRNASeq or scATACSeq data to for cell annotation. They should directly take the unlabeled clus…
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The Modeling Framework focuses on improvements to SIPNET to simulate GHG fluxes.
It will describe the modeling workflow, detailing the inputs, processes, outputs,
temporal and spatial considerations…
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**Submitting author:** @jaime-pru (Jaime Alberto Prudencio Vázquez)
**Repository:** https://github.com/jaime-pru/Analisis-de-datos-espaciales
**Branch with paper.md** (empty if default branch):
**Ve…
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Dear author,
When I tried to browse "Brief tutorial for CellChat analysis of a single spatial resolved transcriptomic dataset" (https://htmlpreview.github.io/?https://github.com/jinworks/CellChat/blo…