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It would be nice to integrate a visualization tool like sashimi plots or write a fast version
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Hello,
I am using your visualization tool for RNA-seq data analysis and have a question about how exon inclusion is depicted. The image shows two graphs in different colors (purple on top and red o…
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* spladder version:3.0.3
* Python version:3.9.15
* Operating System:20.04
### Description
I made a visualization of my splicing result by using below command
### What I Did
spladder viz -…
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__Terms:__
I've annotated each link using the following terms below. I've provided explanations for what I mean by each term.
[Formatting Issues] Usually an issue with bullet or numbered lists
[M…
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Hello,
I have a few suggestions that you might consider/ reject for future development of leafcutter and leafviz applications relating to support for export of results from both leafcutter and leaf…
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Hey @annakat & @ashiklom. This is a preliminary list of features that I think we ultimately want to see implemented in spectrolab. Most of them are ready to go (unmarked).
__\*__ = Features that s…
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Hello! I'm running rMats to identify differential splicing events between 2 conditions, 3 replicates each on illumina reads of different lengths. Here is my code: python ./rmats.py --b1 ./path_to_CTRL…
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Hi!
I am opening my previous ticket again! Once more I listened to some talks in ESHG Vienna and I believe we should have these tools implemented in our analysis pipelines.
As I mentioned previ…
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hi i had bam files unsorted i created with STAR. then i used the Quantify IR bam mode (on unsorted files) with reference genome i buit with irfinder
then i tried to do the Generalized Linear Model w…
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Thank you very much for your pioneering work!
I am especially interested in the SPRINT pipeline and I have a question regarding the creating the meta file as described in the SPRINT file:
I uplo…