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Hello,
is it possible to see differences in lengths in genes like for structural variations ?
Thank you in advance!
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Thank you for providing such a good tool. I tried to simulate various types and lengths of structural variations on a normal cell line, and a total of 40 were simulated at once. However, I have been r…
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Hello, I am currently using FreeHiC in my work and I would like to simulate some structural variations on GM12878. How should I set parameters to simulate multiple different types of structural va…
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Hi,
Does anyone in the lab have any experience trying this for Manta-called SVs? My project is specifically focusing on large structural variations.
Thank you!
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It will be great if it can show a custom track, like the UCSC genome browser.
Updated:
My goal is to check whether SV break an enhancer or not. Currently, it is not easy to get the location of a …
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Hello,
I am using vgtools deconstruct as:
```
vg convert -g smooth.gfa -p > out.pg
vg index out.pg -x out.xg
vg snarls out.xg > out.snarls
vg deconstruct out.xg -r out.snarls -d 2 -e -a -p REF…
GSgen updated
2 years ago
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Data
- Adams HD et al. (2017) A multi-species synthesis of physiological mechanisms in drought-induced tree mortality. Nature Ecology & Evolution 1: 1285–1291. DOI: [10.1038/s41559-017-0248-x](http…
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Lets **have two sets of indel metrics**
- one for short
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Hi,
I've had generally good success assembling chloroplasts with `get_organelle_from_assembly.py`!
One of my samples fails though, with three repeats of the message `Consensus made: (187292-|189…
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Dear @mnshgl0110,
I hope this message finds you well. I am reaching out to you because I am currently utilizing Syri, which I find to be an exceptionally useful tool for calling structural variants (…