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Hello, I found an error in the code while trying to train the model using the Visdrone dataset,
in mmdet-dntr/mmdet/models/roi_heads/cascade_roi_head_cas_t2t_new_jit_mask.py line 411
` #####…
LvRuH updated
8 hours ago
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**CHM13V2 T2T Assembly**
```bash
wget https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/914/755/GCF_009914755.1_T2T-CHM13v2.0/GCF_009914755.1_T2T-CHM13v2.0_genomic.fna.gz
snipe sketch --ref GCF_00…
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Reposted from the original question of @MG-DYM
Hi Sir,I want to use T2T-genome and its transcripts.gtf to builde the Reference.It's going wrong at :
Jul 04 21:37:17 ..... started STAR run
Jul …
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add synteny to hg38 and reference gene track if possible too
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Hi!
-->
**1. What were you trying to do?**
Running vg paths on the gfa file of the T2T-CHM13 reference
**2. What did you want to happen?**
Wanted a txt output to show the reference paths
…
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```
{'diacamma': CalledProcessError(128, ['git', 'ls-remote', '--tags', '--refs', 'https://github.com/Diacamma2']),
'dont-code': CalledProcessError(128, ['git', 'ls-remote', '--tags', '--refs', 'ht…
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Hi,
I am trying to use VEP to annotate variants called against T2T-CHM13, and trying to predict missense variants deleteriousness, but the link to download [homo_sapiens_pangenome_PolyPhen_SIFT_202…
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For mammals, fasta here is HIFI data, so ref.fasta should be telomere data. What format should it be?
>telomere_forward
TTAGGG
>telomere_reverse
CCCTAA
Still only
>telomere_forward
TTAGGG
#!…
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I assembled two haplotype-resolved T2T genomes. When I followed your suggestion to set the parameters and combined the two haplotype genomes into a single FA file for evaluation using GCI, the score w…
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First of all, I'd like to thank you for the amazing work done!
Secondly, I'm working on a fungal species with very high levels of chromosomal polymorphism and large translocations (of Mbp), and I alr…