-
Is it possible to remove a node (or a list of nodes) and (optionally) all those downstream? I am trying to remove all branches of the taxonomy that are unclassified (e.g. 12908).
Something like (wh…
-
Hi, I encontered with a new error in running hecatomb v1.3.2, here is the related log information:
```
15:23:41.923 [WARN] taxid 1965493 was merged into 3070820
15:23:41.923 [WARN] taxid 45219 wa…
-
### Prerequisites
- [x] make sure you're are using the latest version by `taxonkit version`
- [x] read the [usage](http://bioinf.shenwei.me/taxonkit/usage/)
### Describe your issue
`taxonkit` …
-
per @mr-eyes -
>I was trying yesterday to generate lineage information and follow the format as in all_genbank_lineages.20200727.csv and I started using taxonkit reformat for that purpose but still…
-
When using a profile with multiple ranks as input, the output gives summed up ranks for the higher ranks, e.g.:
```
2 1
1224 0.7
1236 0.3
```
Leads to:
```
@SampleID:
@Version:0.10.0
@R…
-
### Prerequisites
- [x] make sure you're are using the latest version by `taxonkit version`
- [x] read the [usage](http://bioinf.shenwei.me/taxonkit/usage/)
### Describe your issue
In the do…
-
In order to use the [OPAL tool](https://github.com/CAMI-challenge/OPAL) for analysis and visualization, it might be useful to convert any supported profiler to [that format](https://github.com/bioboxe…
-
### Prerequisites
- [x] make sure you're are using the latest version by `taxonkit version`
- [x] read the [usage](http://bioinf.shenwei.me/taxonkit/usage/)
### Describe your issue
* [x] des…
-
Hello, I am trying to see if I can install this software without using conda as I'm trying to develop a toolset that has the option of installing with/without conda.
I can install taxonkit using p…
-
When I use "taxonkit create-taxdump -K 1 -P 3 -C 5 -O 7 -F 9 -G 11 -S 13 -T 15"
I will get this error: "Error: unknown shorthand flag: 'K' in -K". Is there a way to solve this error?